PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00024.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LSD
Protein Properties Length: 419aa    MW: 45766.4 Da    PI: 4.5665
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00024.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD145.21.5e-14330354125
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                              CggCr lLsYP GA+sV+C++C+tV
  Sme2.5_00024.1_g00007.1 330 CGGCRQLLSYPQGAKSVKCSCCQTV 354
                              ************************9 PP

2zf-LSD145.41.3e-14368392125
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                              CggC +lL+YP+GApsVRC++C +V
  Sme2.5_00024.1_g00007.1 368 CGGCAVLLMYPYGAPSVRCSSCRHV 392
                              ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-17327357IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-12330354IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-10365394IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-12368392IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEEKLISIDN HKVDEEEDEG PPPGFDSLVV PSQNINALMD EDDDDEGPPP GWPSIPQQNN  60
QKLLQTTDVE MESKEHEAED DEDGPPPGWN TIIPQKKLPS SPPTIKAVTC DLEMKKKEEV  120
VEDKDNGPPP KWKLTPKLPP LQTSTPPSGT QGASLEDIEM EKKEVVVEDE DNGPPPGWQL  180
TPQLPLQQTS TPPLGTQGAP FADLQCDFIF IDQYGKGNGM PNVFVLIETA DIEMVSKQDC  240
DVEKEGHPVG SESIPMTGHS SPPTLPPQSS SSAASSEMEM GSKQEGTKNE EVKRQIEKQP  300
MSHLRQMKPV VPQSSLHAAT VSAEMGQMVC GGCRQLLSYP QGAKSVKCSC CQTVNLVLEA  360
HDVGQVKCGG CAVLLMYPYG APSVRCSSCR HVTKIGAHNR RPPQSVQQPR RRHPSYQVH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754416e-48HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063652.10.0PREDICTED: uncharacterized protein LOC107008945 isoform X1
TrEMBLA0A0V0I4B50.0A0A0V0I4B5_SOLCH; Putative ovule protein
TrEMBLA0A0V0IMR90.0A0A0V0IMR9_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000764220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116422223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-31lsd one like 2